Welcome to ms_deisotope’s documentation!¶
ms_deisotope contains a variety of implementations for deisotoping and charge
state deconvolution of mass spectra. It uses ms_peak_picker to perform the low
level signal processing needed to translate profile spectra into centroided m/z peak lists
and brainpy to generate theoretical isotopic patterns that it fits to these centroids
to produce deconvoluted neutral mass peak lists.
ms_deisotope also includes a data access layer for reading mass spectra from several
common formats, including instrument information and and file metadata.
Contents:
- Installation
- Quickstart
- Deconvolution
- Data Access
- Data Storage
- Visualization
- Command Line Tools
- Glossary